SMTL ID : 5rhg.1

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z235341991

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: R.206 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.206 Water bridges: A:R.44, A:D.109, A:D.109, A:E.210

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: H.13, P.14, G.15, A.16, G.17, K.18, T.19, R.280 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.15, A:A.16, A:G.17, A:K.18, A:T.19, A:R.280 Water bridges: A:T.19, A:R.20, A:E.104 Salt bridges: A:K.18 PO4.3: 2 residues within 4Å: Chain A: R.206, R.416 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.206, A:R.206, A:R.206, A:S.419 Salt bridges: A:R.206 PO4.6: 3 residues within 4Å: Chain A: S.86, K.355 Ligands: NY7.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.86, A:S.86 Salt bridges: A:K.355

2 x NY7: N-(2-methoxy-5-methylphenyl)glycinamide(Non-covalent)

NY7.4: 9 residues within 4Å: Chain A: A.82, T.83, T.85, S.86, L.89, M.354, K.355, D.358 Ligands: PO4.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.85, A:L.89, A:M.354 Hydrogen bonds: A:S.86 NY7.5: 8 residues within 4Å: Chain A: G.117, S.120, T.121, E.124, S.324, L.325, Y.326, R.327 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.326, A:R.327 Hydrogen bonds: A:S.120, A:S.120, A:E.124, A:E.124, A:R.327 Water bridges: A:E.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godoy, A.S. et al., PanDDA analysis group deposition. To Be Published

Release Date

2020-06-10

Peptides

NS3 Helicase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NS3 Helicase

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