SMTL ID : 5rho.1

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z1444783243

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: D.109, R.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.109, A:D.109

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: H.13, P.14, G.15, A.16, G.17, K.18, T.19, R.280 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.15, A:A.16, A:G.17, A:K.18, A:T.19 Water bridges: A:G.17, A:K.18, A:K.18, A:R.20, A:E.104, A:R.280 Salt bridges: A:K.18, A:R.280 PO4.3: 2 residues within 4Å: Chain A: R.206, R.416 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.206, A:R.206 Salt bridges: A:R.206

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 8 residues within 4Å: Chain A: A.82, S.86, L.89, S.111, L.311, V.351, M.354, K.355 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.82, A:L.89, A:L.311, A:V.351 Hydrogen bonds: A:M.354

1 x UQV: [2-(acetylamino)phenyl]acetic acid(Non-covalent)

UQV.5: 8 residues within 4Å: Chain A: R.60, Y.61, M.62, T.63, T.64, V.68, T.69, H.70 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.60 Hydrogen bonds: A:H.70 Water bridges: A:T.63 pi-Stacking: A:H.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godoy, A.S. et al., PanDDA analysis group deposition. To Be Published

Release Date

2020-06-10

Peptides

NS3 Helicase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NS3 Helicase

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