SMTL ID : 5rhx.1

PanDDA analysis group deposition -- Crystal Structure of Zika virus NS3 Helicase in complex with Z1324080698

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: D.109, R.206 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.109, A:D.109 Water bridges: A:R.44

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: H.13, P.14, G.15, A.16, G.17, K.18, T.19, R.280 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.15, A:A.16, A:G.17, A:K.18, A:T.19 Water bridges: A:R.20, A:R.280, A:R.280 Salt bridges: A:K.18, A:R.280 PO4.3: 2 residues within 4Å: Chain A: R.206, R.416 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.206, A:R.206, A:R.206, A:D.228 Salt bridges: A:R.206

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 8 residues within 4Å: Chain A: A.82, S.86, L.89, S.111, L.311, V.351, M.354, K.355 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.82, A:L.89, A:L.311, A:V.351

1 x UR1: 3-fluoro-5-methylbenzene-1-sulfonamide(Non-covalent)

UR1.5: 5 residues within 4Å: Chain A: I.31, R.34, P.58, T.73, I.75 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.34, A:I.75 Hydrogen bonds: A:T.73 Water bridges: A:I.75, A:I.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godoy, A.S. et al., PanDDA analysis group deposition. To Be Published

Release Date

2020-06-10

Peptides

NS3 Helicase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NS3 Helicase

Related Entries With Identical Sequence