SMTL ID : 5rwm.1

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z136583524

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

2 x NU4: 2-methyl-N-(pyridin-4-yl)furan-3-carboxamide(Non-covalent)

NU4.1: 5 residues within 4Å: Chain A: P.438, I.439, Y.440, H.452 Ligands: NU4.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.440, A:Y.440, A:Y.440 Water bridges: A:Y.440 NU4.2: 2 residues within 4Å: Chain A: P.438 Ligands: NU4.1 No protein-ligand interaction detected (PLIP)

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 7 residues within 4Å: Chain A: G.138, T.139, T.186, T.319, D.405, Q.406, H.407 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.319 DMS.4: 5 residues within 4Å: Chain A: Y.286, S.360, S.361, H.407, L.409 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.361 DMS.5: 6 residues within 4Å: Chain A: H.183, H.238, K.284, C.425, T.441, P.442 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.284, A:C.425

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., Regulation of inositol 5-phosphatase activity by the C2 domain of SHIP1 and SHIP2. Structure (2024)

Release Date

2020-11-11

Peptides

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

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