SMTL ID : 5rx2.1

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1827898537

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

1 x WP4: (3R)-N-benzylpyrrolidin-3-amine(Non-covalent)

WP4.1: 4 residues within 4Å: Chain A: L.227, R.230, R.231 Ligands: DMS.6 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.230, A:R.231

1 x WM7: (3S)-N-benzylpyrrolidin-3-amine(Non-covalent)

WM7.2: 6 residues within 4Å: Chain A: T.85, V.86, E.105, N.106, I.108, I.111 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.86, A:E.105, A:I.108, A:I.111 Hydrogen bonds: A:E.105, A:N.106

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 7 residues within 4Å: Chain A: G.138, T.139, T.186, T.319, D.405, Q.406, H.407 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.319 Water bridges: A:T.139 DMS.4: 6 residues within 4Å: Chain A: L.176, Y.286, S.360, S.361, H.407, L.409 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.361 DMS.5: 6 residues within 4Å: Chain A: H.183, H.238, P.287, C.425, T.441, P.442 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.284, A:C.425, A:T.441 DMS.6: 5 residues within 4Å: Chain A: L.227, R.230, E.240, E.241 Ligands: WP4.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., Regulation of inositol 5-phosphatase activity by the C2 domain of SHIP1 and SHIP2. Structure (2024)

Release Date

2020-11-11

Peptides

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

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