SMTL ID : 5ry8.1

INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1374778753

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x B1J: [1-(4-chlorophenyl)-1,2,3-triazol-4-yl]methanol(Non-covalent)

B1J.1: 7 residues within 4Å: Chain A: K.84, T.85, V.86, A.100, E.105, I.108, I.111 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.105, A:I.108, A:I.108, A:I.111

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.2: 9 residues within 4Å: Chain A: R.167, S.177, P.178, F.179, N.180, R.184, H.446 Ligands: PO4.6, MN.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.167, A:R.184 Water bridges: A:R.184

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 7 residues within 4Å: Chain A: G.138, T.139, T.186, T.319, D.405, Q.406, H.407 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.319 Water bridges: A:T.139 DMS.4: 6 residues within 4Å: Chain A: L.176, Y.286, S.360, S.361, H.407, L.409 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.361 DMS.5: 6 residues within 4Å: Chain A: H.183, H.238, K.284, C.425, T.441, P.442 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.284, A:C.425, A:T.441

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 4 residues within 4Å: Chain A: R.167, H.446 Ligands: BTB.2, MN.7 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.446 Salt bridges: A:R.167, A:H.446

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.7: 3 residues within 4Å: Chain A: H.446 Ligands: BTB.2, PO4.6 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.446

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., Regulation of inositol 5-phosphatase activity by the C2 domain of SHIP1 and SHIP2. Structure (2024)

Release Date

2020-11-11

Peptides

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

Related Entries With Identical Sequence