SMTL ID : 5s9p.3 (3 other biounits)

CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX WITH 9-benzyl-2-(3,5-dimethyl-1,2-oxazol-4-yl)-7-(2-hydroxypropan-2-yl)-9H-carbazole-4-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x YW4: 9-benzyl-2-(3,5-dimethyl-1,2-oxazol-4-yl)-7-(2-hydroxypropan-2-yl)-9H-carbazole-4-carboxamide(Non-covalent)

YW4.1: 16 residues within 4Å: Chain A: W.41, P.42, F.43, Q.45, P.46, V.47, D.48, K.51, L.52, L.54, C.96, Y.99, N.100, D.105, I.106, M.109 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.41, A:W.41, A:P.42, A:F.43, A:V.47, A:K.51, A:L.52, A:L.54, A:I.106, A:I.106 Hydrogen bonds: A:P.42, A:Q.45, A:D.48, A:N.100 pi-Stacking: A:W.41

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.60, I.61, K.62, T.63, N.95 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.60, A:K.62, A:T.63, A:T.63, A:T.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gavai, A.V. et al., Discovery and Preclinical Pharmacology of an Oral Bromodomain and Extra-Terminal (BET) Inhibitor Using Scaffold-Hopping and Structure-Guided Drug Design. J.Med.Chem. (2021)

Release Date

2021-09-29

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Bromodomain-containing protein 4

Related Entries With Identical Sequence