- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CIT: CITRIC ACID(Non-functional Binders)
- 6 x W3G: pyridazin-3(2H)-one(Non-covalent)
W3G.2: 5 residues within 4Å:- Chain A: F.46, E.47, W.61, W.89, D.94
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.46
- Hydrogen bonds: A:E.47, A:E.47
- Water bridges: A:K.49
- pi-Stacking: A:W.61
W3G.4: 5 residues within 4Å:- Chain B: F.46, E.47, W.61, W.89, D.94
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:F.46
- Hydrogen bonds: B:E.47, B:E.47
- Water bridges: B:K.49
- pi-Stacking: B:W.61
W3G.6: 5 residues within 4Å:- Chain C: F.46, E.47, W.61, W.89, D.94
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:F.46
- Hydrogen bonds: C:E.47, C:E.47
- Water bridges: C:K.49
- pi-Stacking: C:W.61
W3G.8: 5 residues within 4Å:- Chain D: F.46, E.47, W.61, W.89, D.94
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:F.46
- Hydrogen bonds: D:E.47, D:E.47
- Water bridges: D:K.49, D:K.49
- pi-Stacking: D:W.61
W3G.10: 5 residues within 4Å:- Chain E: F.46, E.47, W.61, W.89, D.94
6 PLIP interactions:6 interactions with chain E- Hydrophobic interactions: E:F.46
- Hydrogen bonds: E:E.47, E:E.47
- Water bridges: E:K.49, E:K.49
- pi-Stacking: E:W.61
W3G.12: 5 residues within 4Å:- Chain F: F.46, E.47, W.61, W.89, D.94
6 PLIP interactions:6 interactions with chain F- Hydrophobic interactions: F:F.46
- Hydrogen bonds: F:E.47, F:E.47
- Water bridges: F:K.49, F:K.49
- pi-Stacking: F:W.61
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Godoy, A.S. et al., Allosteric regulation and crystallographic fragment screening of SARS-CoV-2 NSP15 endoribonuclease. Nucleic Acids Res. (2023)
- Release Date
- 2021-06-09
- Peptides
- Uridylate-specific endoribonuclease: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
BE
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CIT: CITRIC ACID(Non-functional Binders)
- 6 x W3G: pyridazin-3(2H)-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Godoy, A.S. et al., Allosteric regulation and crystallographic fragment screening of SARS-CoV-2 NSP15 endoribonuclease. Nucleic Acids Res. (2023)
- Release Date
- 2021-06-09
- Peptides
- Uridylate-specific endoribonuclease: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
BE
BF
B