SMTL ID : 5sag.1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NendoU in complex with EN300-1605072

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-hexamer

Ligands

3 x ZQG: 3-(1H-imidazol-2-yl)propan-1-amine(Non-covalent)

ZQG.1: 5 residues within 4Å: Chain D: N.76, G.79, V.80, D.81 Chain E: D.39 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain E Water bridges: D:N.76, E:D.39 Hydrogen bonds: E:D.39 ZQG.2: 5 residues within 4Å: Chain E: N.76, G.79, V.80, D.81 Chain F: D.39 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain F Water bridges: E:N.76, F:D.39 Hydrogen bonds: F:D.39 ZQG.3: 5 residues within 4Å: Chain D: D.39 Chain F: N.76, G.79, V.80, D.81 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F Hydrogen bonds: D:D.39 Water bridges: D:D.39, F:N.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godoy, A.S. et al., Allosteric regulation and crystallographic fragment screening of SARS-CoV-2 NSP15 endoribonuclease. Nucleic Acids Res. (2023)

Release Date

2021-06-09

Peptides

Uridylate-specific endoribonuclease: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
B

E
B

F
B

Uridylate-specific endoribonuclease

Related Entries With Identical Sequence