SMTL ID : 5sav.1

DDR1, N-[2-[3-(2-aminopyrimidin-5-yl)oxyphenyl]ethyl]-3-(trifluoromethoxy)benzamide, 1.760A, P212121, Rfree=23.5%

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x 1IJ: N-(2-{3-[(2-aminopyrimidin-5-yl)oxy]phenyl}ethyl)-3-(trifluoromethoxy)benzamide(Non-covalent)

1IJ.1: 23 residues within 4Å: Chain A: L.24, V.32, A.61, K.63, E.80, I.83, M.84, L.87, I.92, I.93, M.107, T.109, D.110, Y.111, M.112, L.159, F.164, H.166, L.175, I.184, A.185, D.186, F.187 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.32, A:A.61, A:K.63, A:E.80, A:I.83, A:T.109, A:D.186, A:F.187 Hydrogen bonds: A:E.80, A:E.80, A:M.112, A:M.112, A:D.186 Water bridges: A:K.63, A:D.186

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: F.247, Q.249 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: Q.125, L.126 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: H.304 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, H. et al., Crystal Structure of a DDR1 complex. To be published

Release Date

2022-06-29

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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