SMTL ID : 5saw.1

DDR1, 2-[3-(2-pyridin-3-ylethynyl)phenyl]-N-[3-(trifluoromethyl)phenyl]acetamide, 1.601A, P212121, Rfree=22.6%

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 1IM: 2-{3-[(pyridin-3-yl)ethynyl]phenyl}-N-[3-(trifluoromethyl)phenyl]acetamide(Non-covalent)

1IM.1: 21 residues within 4Å: Chain A: L.24, V.32, A.61, K.63, E.80, I.83, M.84, L.87, I.92, I.93, T.109, D.110, Y.111, M.112, F.164, H.166, L.175, I.184, A.185, D.186, F.187 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.24, A:V.32, A:A.61, A:K.63, A:K.63, A:I.83, A:I.93, A:T.109, A:L.175, A:D.186 Hydrogen bonds: A:E.80, A:E.80, A:M.112, A:D.186

10 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: F.247, Q.249 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: Q.125, L.126 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: L.285, R.288, Q.302 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: L.282 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: S.16 Ligand excluded by PLIP IOD.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain A: I.140, S.141, F.180 Ligand excluded by PLIP IOD.9: 1 residues within 4Å: Chain A: R.305 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: A.150, H.304 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: S.39, H.56, P.57 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, H. et al., Crystal Structure of a DDR1 complex. To be published

Release Date

2022-06-29

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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