SMTL ID : 5saz.1

DDR1, 3-chloro-N-[4-chloro-3-(1H-pyrrolo[2,3-b]pyridin-5-ylcarbamoyl)phenyl]-4-(2-hydroxyethylamino)benzamide, 1.802A, P212121, Rfree=22.2%

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 1IW: 2-chloro-5-{3-chloro-4-[(2-hydroxyethyl)amino]benzamido}-N-(1H-pyrrolo[2,3-b]pyridin-5-yl)benzamide(Non-covalent)

1IW.1: 19 residues within 4Å: Chain A: L.24, V.32, A.61, V.62, K.63, E.80, M.84, L.87, I.93, T.109, D.110, Y.111, M.112, G.115, F.164, L.175, A.185, D.186, F.187 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.24, A:V.32, A:K.63, A:E.80, A:I.93, A:T.109, A:L.175, A:D.186 Hydrogen bonds: A:E.80, A:T.109, A:M.112, A:M.112, A:H.166, A:D.186 Water bridges: A:K.63, A:D.186 pi-Cation interactions: A:K.63

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 11 residues within 4Å: Chain A: W.236, M.240, A.244, Q.245, P.246, F.247, G.248, Q.249, L.272, S.273 Ligands: CL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.247, A:G.248, A:S.273

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: F.247, G.248, Q.249 Ligands: MES.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, H. et al., Crystal Structure of a DDR1 complex. To be published

Release Date

2022-06-29

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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