SMTL ID : 5sb0.1

DDR1, N-[[2-(2-pyridin-3-yloxyethyl)cyclohexyl]methyl]-3-(trifluoromethoxy)benzamide, 1.970A, P212121, Rfree=25.6%

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: F.247, Q.249 Ligand excluded by PLIP

1 x 1IZ: N-{[(1R,2S)-2-{2-[(pyridin-3-yl)oxy]ethyl}cyclohexyl]methyl}-3-(trifluoromethoxy)benzamide(Non-covalent)

1IZ.2: 21 residues within 4Å: Chain A: L.24, A.61, K.63, E.80, I.83, M.84, L.87, I.92, I.93, T.109, D.110, Y.111, M.112, L.159, F.164, H.166, L.175, I.184, A.185, D.186, F.187 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.24, A:K.63, A:E.80, A:I.83, A:I.93, A:I.93, A:T.109, A:D.186 Hydrogen bonds: A:E.80, A:M.112, A:D.186 Halogen bonds: A:I.184

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: V.32, K.63 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, H. et al., Crystal Structure of a DDR1 complex. To be published

Release Date

2022-06-29

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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