SMTL ID : 5sb1.1

DDR1, 4-chloro-N-[(3S,4R)-4-phenylpyrrolidin-3-yl]-3-(1H-pyrrolo[2,3-b]pyridin-5-yloxymethyl)benzamide, 1.530A, P212121, Rfree=21.4%

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x 1JI: 4-chloro-N-[(3S,4R)-4-phenylpyrrolidin-3-yl]-3-{[(1H-pyrrolo[2,3-b]pyridin-5-yl)oxy]methyl}benzamide(Non-covalent)

1JI.1: 22 residues within 4Å: Chain A: L.24, V.32, A.61, K.63, E.80, I.83, M.84, L.87, I.92, I.93, M.107, T.109, D.110, Y.111, M.112, G.115, H.166, L.175, I.184, A.185, D.186, F.187 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.24, A:K.63, A:L.87, A:I.92, A:I.93, A:T.109, A:L.175, A:D.186 Hydrogen bonds: A:E.80, A:M.112, A:M.112, A:D.186

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: W.236, Q.245, P.246, F.247, G.248, L.272, S.273 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.247, A:G.248, A:S.273 Water bridges: A:Q.249, A:Q.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, H. et al., Crystal Structure of a DDR1 complex. To be published

Release Date

2022-06-29

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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