SMTL ID : 5sb2.1

DDR1, 3-chloro-N-[(1R,2S)-2-phenylcyclopropyl]-5-(1H-pyrrolo[2,3-b]pyridin-5-yloxymethyl)benzamide, 1.600A, P212121, Rfree=23.2%

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

5 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 5 residues within 4Å: Chain A: E.26, G.27, G.30, K.63, G.188 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: F.247, Q.249 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: G.25 Ligand excluded by PLIP IOD.4: 4 residues within 4Å: Chain A: L.285, R.288, P.298, Q.302 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: Q.125, L.126 Ligand excluded by PLIP

1 x 1K2: 3-chloro-N-[(1R,2S)-2-phenylcyclopropyl]-5-{[(1H-pyrrolo[2,3-b]pyridin-5-yl)oxy]methyl}benzamide(Non-covalent)

1K2.6: 21 residues within 4Å: Chain A: L.24, V.32, A.61, K.63, E.80, M.84, L.87, I.93, M.107, T.109, D.110, Y.111, M.112, G.115, F.164, H.166, L.175, I.184, A.185, D.186, F.187 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.24, A:L.24, A:V.32, A:E.80, A:L.87, A:I.93, A:I.93, A:T.109, A:F.164, A:L.175, A:L.175, A:D.186, A:F.187, A:F.187 Hydrogen bonds: A:E.80, A:M.112, A:M.112, A:D.186 Halogen bonds: A:M.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, H. et al., Crystal Structure of a DDR1 complex. To be published

Release Date

2022-06-29

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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