SMTL ID : 5sbm.1

CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z1267885772

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

monomer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 7 residues within 4Å: Chain A: C.10, C.112, T.113, S.114, N.132, R.133, D.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.133, A:D.134 Salt bridges: A:D.134 DMS.2: 2 residues within 4Å: Chain A: H.83, T.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.84 DMS.3: 2 residues within 4Å: Chain A: S.139, K.140 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.141 DMS.4: 3 residues within 4Å: Chain A: C.10, E.110, C.112 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.110

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: N.39, T.41, F.102, N.103, A.104 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.41, A:N.103, A:A.104 Water bridges: A:S.105 EDO.6: 6 residues within 4Å: Chain A: R.11, F.16, F.38, S.40, N.103, V.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.40, A:S.40, A:N.103 Water bridges: A:R.11

1 x 8AB: (3S)-3-methyl-1-(6-methylpyridin-2-yl)piperazine

8AB.7: 6 residues within 4Å: Chain A: Y.12, S.53, K.54, G.55, I.73, E.110 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.73 Hydrogen bonds: A:S.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., CD44 PanDDA analysis group deposition. To Be Published

Release Date

2021-09-22

Peptides

CD44 antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD44 antigen

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