SMTL ID : 5sbr.1

CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z1259341012

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x 8B2: (1R)-1-[4-(morpholin-4-yl)phenyl]ethan-1-amine

8B2.1: 11 residues within 4Å: Chain A: R.11, F.16, F.38, S.40, N.103, T.113, S.114, V.115, T.116, P.119 Ligands: DMS.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.40, A:N.103 Water bridges: A:T.113

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: C.10, C.112, T.113, S.114, N.132, R.133, D.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.133, A:D.134 Salt bridges: A:D.134 DMS.3: 2 residues within 4Å: Chain A: H.83, T.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.84 DMS.4: 4 residues within 4Å: Chain A: N.103, S.105, A.106 Ligands: 8B2.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.111

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: N.39, S.40, T.41, F.102, N.103, A.104 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.41, A:N.103, A:A.104 Water bridges: A:N.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., CD44 PanDDA analysis group deposition. To Be Published

Release Date

2021-09-22

Peptides

CD44 antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD44 antigen

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