SMTL ID : 5sc0.1

CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z2856434899

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

monomer

Ligands

1 x T0Y: 1-[(thiophen-3-yl)methyl]piperidin-4-ol(Non-covalent)

T0Y.1: 4 residues within 4Å: Chain A: F.122, D.123, G.124, P.125 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.125

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: C.10, C.112, T.113, S.114, N.132, R.133, D.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.133, A:D.134 Salt bridges: A:D.134 DMS.3: 2 residues within 4Å: Chain A: H.83, T.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.84 DMS.4: 2 residues within 4Å: Chain A: S.139, K.140 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.139, A:K.141

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: N.39, T.41, F.102, N.103, A.104 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.41, A:A.104 Water bridges: A:N.103, A:S.105, A:S.105 EDO.6: 5 residues within 4Å: Chain A: R.11, F.16, F.38, S.40, N.103 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.40, A:S.40, A:N.103 Water bridges: A:R.11, A:R.11 EDO.7: 2 residues within 4Å: Chain A: N.39, P.119 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.39, A:N.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., CD44 PanDDA analysis group deposition. To Be Published

Release Date

2021-09-22

Peptides

CD44 antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD44 antigen

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