SMTL ID : 5sc2.1

CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z190780124

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

monomer

Ligands

2 x 8D8: (3S)-N-[(1R)-1-cyclopropylethyl]-2-oxo-2,3-dihydropyridine-3-carboxamide

8D8.1: 5 residues within 4Å: Chain A: R.11, T.113, S.114, T.116 Ligands: 8D8.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.11, A:T.113 Water bridges: A:S.114 8D8.2: 9 residues within 4Å: Chain A: R.11, F.16, F.38, N.103, V.115, T.116, D.117, P.119 Ligands: 8D8.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.16, A:N.103, A:D.117, A:P.119 Hydrogen bonds: A:T.116, A:D.117 Water bridges: A:N.103

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 7 residues within 4Å: Chain A: C.10, C.112, T.113, S.114, N.132, R.133, D.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.133, A:D.134 Salt bridges: A:D.134 DMS.4: 2 residues within 4Å: Chain A: H.83, T.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.84 DMS.5: 3 residues within 4Å: Chain A: S.139, K.140, K.141 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.139, A:K.141

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 6 residues within 4Å: Chain A: N.39, S.40, T.41, F.102, N.103, A.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.41, A:A.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., CD44 PanDDA analysis group deposition. To Be Published

Release Date

2021-09-22

Peptides

CD44 antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD44 antigen

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