SMTL ID : 5scs.1

Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-781

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: W.26, A.27, I.34, G.35, R.36, G.38, D.39, I.40, G.63, R.64, R.65, T.66, S.69, L.85, S.86, R.87, Q.88, G.100, S.101, I.114, G.115, G.116, G.117, Q.118, V.119, Y.120, L.122, A.146 Ligands: GYI.2 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:I.40, A:T.66 Hydrogen bonds: A:A.27, A:I.34, A:R.36, A:G.38, A:G.38, A:G.63, A:G.63, A:R.64, A:R.64, A:R.65, A:T.66, A:T.66, A:S.69, A:R.87, A:R.87, A:R.87, A:Q.88, A:Q.88, A:G.116, A:G.117, A:Q.118, A:V.119 Water bridges: A:R.65, A:R.65, A:Q.118, A:Q.118, A:Q.118, A:Q.118 Salt bridges: A:R.64, A:R.65 pi-Cation interactions: A:R.87, A:R.87

1 x GYI: 3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)-N-(propane-2-sulfonyl)propanamide(Non-covalent)

GYI.2: 18 residues within 4Å: Chain A: I.25, W.26, A.27, I.40, R.43, D.47, Q.48, F.51, R.52, L.70, P.71, V.74, L.77, P.78, R.80, I.114, Y.120 Ligands: NAP.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.40, A:L.70, A:P.71, A:V.74, A:L.77 Hydrogen bonds: A:I.25, A:R.52, A:R.80, A:R.80, A:Y.120, A:T.133, A:T.133 Water bridges: A:T.133 Salt bridges: A:D.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayclin, S.J. et al., Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-781. to be published

Release Date

2022-02-09

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydrofolate reductase

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