SMTL ID : 5sct.1

Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-783

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 28 residues within 4Å: Chain A: W.26, A.27, I.34, G.35, G.38, D.39, I.40, W.42, G.63, R.64, R.65, T.66, S.69, L.85, S.86, R.87, Q.88, G.100, I.114, G.115, G.116, G.117, Q.118, V.119, Y.120, L.122, A.146 Ligands: H03.2 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:I.40 Hydrogen bonds: A:A.27, A:I.34, A:G.63, A:R.64, A:R.64, A:R.65, A:R.65, A:T.66, A:S.69, A:S.86, A:R.87, A:Q.88, A:Q.88, A:G.116, A:G.117, A:Q.118, A:Q.118, A:V.119 Water bridges: A:G.38, A:G.38, A:R.65, A:S.69, A:R.87, A:R.87, A:R.87, A:R.87, A:R.87, A:R.87, A:R.87, A:L.102 Salt bridges: A:R.64 pi-Cation interactions: A:R.87

1 x H03: 3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)-N-(dimethylsulfamoyl)propanamide(Non-covalent)

H03.2: 16 residues within 4Å: Chain A: I.25, W.26, A.27, D.39, I.40, R.43, D.47, Q.48, F.51, R.52, S.69, L.70, I.114, Y.120, T.133 Ligands: NAP.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.40, A:Q.48, A:F.51, A:L.70, A:I.114 Hydrogen bonds: A:I.25, A:Q.48, A:R.52, A:Y.120, A:T.133, A:T.133 Water bridges: A:R.43, A:R.52, A:R.52 Salt bridges: A:D.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayclin, S.J. et al., Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-783. to be published

Release Date

2022-02-09

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydrofolate reductase

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