SMTL ID : 5skx.1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z126932614

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

1 x T6J: 2-[(methylsulfonyl)methyl]-1H-benzimidazole(Non-covalent)

T6J.1: 7 residues within 4Å: Chain A: F.56, K.57, K.196, I.197, F.213, T.215, Y.231 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.196, A:F.213, A:T.215 Water bridges: A:V.195 pi-Stacking: A:Y.231

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: R.77, H.78, R.80, A.81, L.173, S.174, D.175, R.176 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.80, A:A.81, A:L.173, A:D.175, A:D.175 Water bridges: A:H.78, A:R.80 Salt bridges: A:H.78 PO4.3: 5 residues within 4Å: Chain A: Y.442, S.444, S.446, H.482, E.486 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.442, A:S.446, A:S.446, A:E.486 Water bridges: A:D.445 Salt bridges: A:H.482

3 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: H.253, C.257, H.260, C.275 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.253, A:C.257, A:H.260, A:C.275 ZN.5: 4 residues within 4Å: Chain A: C.448, C.473, C.480, H.483 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.448, A:C.473, A:C.480, A:H.483 ZN.6: 4 residues within 4Å: Chain A: C.203, C.206, C.222, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.203, A:C.206, A:C.222, A:H.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imprachim, N. et al., PanDDA analysis group deposition. To Be Published

Release Date

2022-03-16

Peptides

Proofreading exoribonuclease nsp14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Proofreading exoribonuclease nsp14

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