SMTL ID : 5sl0.1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z57260516

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.253, C.257, H.260, C.275 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.253, A:C.257, A:H.260, A:C.275 ZN.2: 4 residues within 4Å: Chain A: C.448, C.473, C.480, H.483 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.448, A:C.473, A:C.480, A:H.483 ZN.3: 4 residues within 4Å: Chain A: C.203, C.206, C.222, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.203, A:C.206, A:C.222, A:H.225

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 6 residues within 4Å: Chain A: R.77, H.78, R.80, A.81, S.174, D.175 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.174, A:D.175 Water bridges: A:R.77, A:R.80 Salt bridges: A:H.78 PO4.5: 5 residues within 4Å: Chain A: Y.442, S.444, S.446, H.482, E.486 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.442, A:S.444, A:S.444, A:S.446, A:E.486 Salt bridges: A:H.482

2 x B0V: 2-methoxy-~{N}-(2,4,6-trimethylphenyl)ethanamide(Non-covalent)

B0V.6: 6 residues within 4Å: Chain A: D.320, F.322, T.374, N.391, Y.507, Q.509 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.322, A:N.391, A:Y.507, A:Y.507, A:Q.509 Hydrogen bonds: A:Q.509 Water bridges: A:T.374 B0V.7: 8 residues within 4Å: Chain A: I.328, Y.347, L.362, F.363, Y.364, Y.366, D.371, F.373 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imprachim, N. et al., PanDDA analysis group deposition. To Be Published

Release Date

2022-03-16

Peptides

Proofreading exoribonuclease nsp14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Proofreading exoribonuclease nsp14

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