SMTL ID : 5sl7.1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1186029914

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.253, C.257, H.260, C.275 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.253, A:C.257, A:H.260, A:C.275 ZN.2: 4 residues within 4Å: Chain A: C.448, C.473, C.480, H.483 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.448, A:C.473, A:C.480, A:H.483 ZN.3: 4 residues within 4Å: Chain A: C.203, C.206, C.222, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.203, A:C.206, A:C.222, A:H.225

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: H.78, S.174, D.175, P.293 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.175, A:D.175 Water bridges: A:R.77, A:R.80 Salt bridges: A:H.78 PO4.5: 5 residues within 4Å: Chain A: Y.442, S.444, S.446, H.482, E.486 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.442, A:S.444, A:S.446, A:S.446 Water bridges: A:Y.442, A:S.444 Salt bridges: A:H.482

1 x W0G: (3R)-1-(2-fluorophenyl)-3-(methylamino)pyrrolidin-2-one(Non-covalent)

W0G.6: 6 residues within 4Å: Chain A: K.314, L.317, L.318, V.337, A.340, D.341 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.314, A:L.317, A:L.318, A:V.337, A:A.340 Hydrogen bonds: A:D.341, A:D.341, A:D.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imprachim, N. et al., PanDDA analysis group deposition. To Be Published

Release Date

2022-03-16

Peptides

Proofreading exoribonuclease nsp14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Proofreading exoribonuclease nsp14

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