SMTL ID : 5sle.1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z56880342

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.253, C.257, H.260, C.275 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.253, A:C.257, A:H.260, A:C.275 ZN.2: 4 residues within 4Å: Chain A: C.448, C.473, C.480, H.483 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.448, A:C.473, A:C.480, A:H.483 ZN.3: 4 residues within 4Å: Chain A: C.203, C.206, C.222, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.203, A:C.206, A:C.222, A:H.225

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 3 residues within 4Å: Chain A: H.78, S.174, D.175 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.174, A:D.175 Water bridges: A:R.80 Salt bridges: A:H.78 PO4.5: 5 residues within 4Å: Chain A: Y.442, S.444, S.446, H.482, E.486 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.442, A:S.444, A:S.444, A:S.446, A:E.486 Water bridges: A:D.445 Salt bridges: A:H.482

2 x JGA: N-ethyl-N'-(5-methyl-1,2-oxazol-3-yl)urea(Non-covalent)

JGA.6: 8 residues within 4Å: Chain A: N.330, A.349, P.351, W.381, N.382, F.397, F.422, T.424 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.351, A:N.382, A:F.397 Hydrogen bonds: A:N.382 Water bridges: A:N.382, A:N.382 pi-Stacking: A:F.422 JGA.7: 7 residues within 4Å: Chain A: I.38, P.39, G.40, I.41, L.50, M.53, T.189 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.38, A:I.38, A:L.50, A:M.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imprachim, N. et al., PanDDA analysis group deposition. To Be Published

Release Date

2022-03-16

Peptides

Proofreading exoribonuclease nsp14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Proofreading exoribonuclease nsp14

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