SMTL ID : 5slq.1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434829

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.253, C.257, H.260, C.275 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.253, A:C.257, A:H.260, A:C.275 ZN.2: 4 residues within 4Å: Chain A: C.448, C.473, C.480, H.483 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.448, A:C.473, A:C.480, A:H.483 ZN.3: 4 residues within 4Å: Chain A: C.203, C.206, C.222, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.203, A:C.206, A:C.222, A:H.225

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 5 residues within 4Å: Chain A: H.78, R.80, S.174, D.175, P.293 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.174, A:D.175 Water bridges: A:R.77, A:R.80 Salt bridges: A:H.78 PO4.5: 5 residues within 4Å: Chain A: Y.442, S.444, S.446, H.482, E.486 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.442, A:S.444, A:S.446, A:E.486 Water bridges: A:D.445

1 x ELQ: [3,4-bis(fluoranyl)phenyl]-(4-methylpiperazin-1-yl)methanone(Non-covalent)

ELQ.6: 7 residues within 4Å: Chain A: K.314, L.317, L.318, V.337, Q.339, A.340, D.341 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.318, A:A.340 Hydrogen bonds: A:D.341 Water bridges: A:V.342 Salt bridges: A:D.341 Halogen bonds: A:K.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imprachim, N. et al., PanDDA analysis group deposition. To Be Published

Release Date

2022-03-16

Peptides

Proofreading exoribonuclease nsp14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Proofreading exoribonuclease nsp14

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