SMTL ID : 5slr.1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2073741691

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.253, C.257, H.260, C.275 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.253, A:C.257, A:H.260, A:C.275 ZN.2: 4 residues within 4Å: Chain A: C.448, C.473, C.480, H.483 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.448, A:C.473, A:C.480, A:H.483 ZN.3: 4 residues within 4Å: Chain A: C.203, C.206, C.222, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.203, A:C.206, A:C.222, A:H.225

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: H.78, S.174, D.175, P.293 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.174, A:D.175 Salt bridges: A:H.78 PO4.5: 6 residues within 4Å: Chain A: Y.442, S.444, S.446, H.482, H.483, E.486 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.442, A:Y.442, A:S.444, A:S.446, A:S.446, A:E.486 Water bridges: A:S.446 Salt bridges: A:H.482

1 x LO6: 2-(difluoromethoxy)-1-[(2R,6S)-2,6-dimethylmorpholin-4-yl]ethan-1-one(Non-covalent)

LO6.6: 7 residues within 4Å: Chain A: N.156, V.157, R.159, I.160, T.215, D.230, Y.231 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.157, A:I.160, A:D.230 Hydrogen bonds: A:N.156, A:R.159 Water bridges: A:D.230 Halogen bonds: A:Y.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imprachim, N. et al., PanDDA analysis group deposition. To Be Published

Release Date

2022-03-16

Peptides

Proofreading exoribonuclease nsp14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Proofreading exoribonuclease nsp14

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