SMTL ID : 5sm5.1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434807

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.253, C.257, H.260, C.275 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.253, A:C.257, A:H.260, A:C.275 ZN.2: 4 residues within 4Å: Chain A: C.448, C.473, C.480, H.483 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.448, A:C.473, A:C.480, A:H.483 ZN.3: 4 residues within 4Å: Chain A: C.203, C.206, C.222, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.203, A:C.206, A:C.222, A:H.225

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 6 residues within 4Å: Chain A: R.77, H.78, A.81, S.174, D.175, P.293 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.78, A:A.81, A:D.175 Water bridges: A:R.77, A:R.80, A:L.173 Salt bridges: A:H.78 PO4.5: 5 residues within 4Å: Chain A: Y.442, S.444, S.446, H.482, E.486 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.442, A:S.444, A:S.446 Water bridges: A:K.307, A:Y.443 Salt bridges: A:H.482

1 x S5J: 2-[4-(2-methoxyphenyl)piperazin-1-yl]ethanenitrile(Non-covalent)

S5J.6: 8 residues within 4Å: Chain A: R.306, K.307, Q.309, H.310, I.334, K.335, C.336, P.338 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:H.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imprachim, N. et al., PanDDA analysis group deposition. To Be Published

Release Date

2022-03-16

Peptides

Proofreading exoribonuclease nsp14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Proofreading exoribonuclease nsp14

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