SMTL ID : 5smf.1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z56791867

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.253, C.257, H.260, C.275 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.253, A:C.257, A:H.260, A:C.275 ZN.2: 4 residues within 4Å: Chain A: C.448, C.473, C.480, H.483 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.448, A:C.473, A:C.480, A:H.483 ZN.3: 4 residues within 4Å: Chain A: C.203, C.206, C.222, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.203, A:C.206, A:C.222, A:H.225

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 7 residues within 4Å: Chain A: R.77, H.78, L.173, S.174, D.175, R.176, P.293 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.174, A:D.175 Water bridges: A:R.77, A:R.80, A:R.80 Salt bridges: A:H.78 PO4.5: 5 residues within 4Å: Chain A: Y.442, S.444, S.446, H.482, E.486 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.442, A:S.444, A:S.444, A:S.446, A:E.486 Water bridges: A:D.445 Salt bridges: A:H.482

2 x K1S: N,N-diethyl-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7-amine(Non-covalent)

K1S.6: 10 residues within 4Å: Chain A: D.37, I.38, T.99, N.100, L.101, L.103, G.185, F.186, T.189 Ligands: K1S.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.38, A:L.101, A:F.186 pi-Stacking: A:F.186 K1S.7: 5 residues within 4Å: Chain A: G.98, T.189, K.192, Y.193 Ligands: K1S.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imprachim, N. et al., PanDDA analysis group deposition. To Be Published

Release Date

2022-03-16

Peptides

Proofreading exoribonuclease nsp14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Proofreading exoribonuclease nsp14

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