SMTL ID : 5smh.1

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z2856434938

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.253, C.257, H.260, C.275 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.253, A:C.257, A:H.260, A:C.275 ZN.2: 4 residues within 4Å: Chain A: C.448, C.473, C.480, H.483 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.448, A:C.473, A:C.480, A:H.483 ZN.3: 5 residues within 4Å: Chain A: C.203, C.206, R.208, C.222, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.203, A:C.206, A:C.222, A:H.225

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: H.78, S.174, D.175, P.293 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.174, A:D.175 Water bridges: A:H.78, A:R.80, A:L.173 Salt bridges: A:H.78 PO4.5: 5 residues within 4Å: Chain A: Y.442, S.444, S.446, H.482, E.486 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.442, A:S.444, A:S.446, A:E.486 Water bridges: A:S.446 Salt bridges: A:H.482

1 x 7ZC: 1-(5-methoxy-1H-indol-3-yl)-N,N-dimethyl-methanamine(Non-covalent)

7ZC.6: 7 residues within 4Å: Chain A: E.291, Y.292, I.294, L.299, N.302, N.418, K.419 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.294, A:K.419, A:K.419 Hydrogen bonds: A:N.302, A:K.419 Water bridges: A:I.294 Salt bridges: A:E.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imprachim, N. et al., PanDDA analysis group deposition. To Be Published

Release Date

2022-03-16

Peptides

Proofreading exoribonuclease nsp14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Proofreading exoribonuclease nsp14

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