SMTL ID : 5ssy.1

Crystal Structure of human formylglycine generating enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x CU1: COPPER (I) ION(Non-covalent)

CU1.1: 3 residues within 4Å: Chain A: C.273, C.278, R.280 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.273, A:C.278, A:C.278

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: T.71, E.74, K.75, N.78 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.71, A:E.74, A:K.75 Hydrogen bonds: A:E.74, A:E.74, A:N.78

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: E.67, N.230, I.231, G.233, A.235, E.237 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.67, A:N.230, A:G.233, A:A.235, A:E.237, H2O.4 CA.4: 4 residues within 4Å: Chain A: N.196, I.197, D.210, F.212 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.197, A:D.210, A:F.212, H2O.3, H2O.4

1 x UG6: methyl N-acetyl-L-cysteinate(Non-covalent)

UG6.5: 8 residues within 4Å: Chain A: F.95, G.97, M.98, W.198, V.204, N.206, Q.213, Y.271 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.206 Water bridges: A:N.206, A:Q.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kowal, J. et al., Crystal Structure of human formylglycine generating enzyme in complex with N-acetyl-cysteine methylester. To be published

Release Date

2023-08-23

Peptides

Formylglycine-generating enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Formylglycine-generating enzyme

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