SMTL ID : 5sul.1

Inhibited state structure of yGsy2p

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-tetramer

Ligands

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 12 residues within 4Å: Chain A: G.339, R.340, K.346, V.376, F.500, L.501, Y.512, E.529, G.532, Y.533, T.534, E.537 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.500 Hydrogen bonds: A:R.340, A:L.501, A:Y.533, A:T.534, A:T.534, A:E.537 Salt bridges: A:R.340, A:K.346, A:K.346 pi-Stacking: A:Y.512 UDP.3: 12 residues within 4Å: Chain C: G.339, R.340, K.346, V.376, F.500, L.501, Y.512, E.529, G.532, Y.533, T.534, E.537 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:F.500 Hydrogen bonds: C:R.340, C:L.501, C:E.529, C:Y.533, C:T.534, C:T.534, C:E.537 Salt bridges: C:R.340, C:K.346, C:K.346 pi-Stacking: C:Y.512

2 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.2: 10 residues within 4Å: Chain B: G.339, R.340, K.346, F.500, L.501, Y.512, E.529, Y.533, T.534, E.537 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.500, B:Y.512 Hydrogen bonds: B:R.340, B:L.501, B:E.529, B:Y.533, B:E.537 Salt bridges: B:K.346 pi-Stacking: B:F.500 U5P.4: 10 residues within 4Å: Chain D: G.339, R.340, K.346, F.500, L.501, Y.512, E.529, Y.533, T.534, E.537 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:F.500, D:Y.512 Hydrogen bonds: D:R.340, D:L.501, D:E.529, D:E.529, D:Y.533, D:E.537 Salt bridges: D:K.346 pi-Stacking: D:F.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahalingan, K.K. et al., Redox Switch for the Inhibited State of Yeast Glycogen Synthase Mimics Regulation by Phosphorylation. Biochemistry (2017)

Release Date

2017-06-14

Peptides

Glycogen [starch] synthase isoform 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Glycogen [starch] synthase isoform 2

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