- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.48 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x 70Q: 3-benzyl-N-[3-(dimethylsulfamoyl)phenyl]-4-oxo-3,4-dihydrophthalazine-1-carboxamide(Non-covalent)
70Q.2: 15 residues within 4Å:- Chain A: R.112, E.113, A.114, I.116, W.127, K.129, P.130, I.131, I.133, A.261, M.262, E.265, G.266, W.270
- Ligands: 70Q.8
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:A.114, A:W.127, A:I.131, A:I.131, A:I.133, A:I.133
- pi-Stacking: A:W.127, A:W.127, A:W.127, A:W.270
70Q.8: 17 residues within 4Å:- Chain B: R.112, E.113, A.114, I.116, W.127, K.129, I.131, I.133, V.258, A.261, M.262, S.264, E.265, G.266, W.270, M.294
- Ligands: 70Q.2
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:R.112, B:A.114, B:W.127, B:I.131, B:I.131, B:I.131, B:I.133, B:V.258, B:V.258, B:W.270, B:W.270
- pi-Stacking: B:W.127, B:W.127, B:W.127
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 7 residues within 4Å:- Chain A: H.173, N.174, F.175, E.176, E.177, G.178
- Chain B: Q.188
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.174, A:E.176, A:E.177, A:E.177, B:Q.188
- Salt bridges: A:H.173
SO4.4: 7 residues within 4Å:- Chain A: Y.322, Q.326, E.327, T.328, N.396, T.397, F.398
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.328, A:T.397, A:F.398
SO4.9: 7 residues within 4Å:- Chain A: Q.188
- Chain B: H.173, N.174, F.175, E.176, E.177, G.178
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.176, B:E.177, B:G.178, A:Q.188
- Salt bridges: B:H.173
SO4.10: 2 residues within 4Å:- Chain B: K.154, E.156
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:K.154
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 5 residues within 4Å:- Chain A: R.317, H.318, M.321, E.327, K.377
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.317, A:H.318, A:S.329, A:K.377
- Water bridges: A:Y.394
EDO.11: 3 residues within 4Å:- Chain B: Y.322, G.325, Q.326
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.325
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xie, X. et al., Allosteric Mutant IDH1 Inhibitors Reveal Mechanisms for IDH1 Mutant and Isoform Selectivity. Structure (2017)
- Release Date
- 2017-02-08
- Peptides
- Isocitrate dehydrogenase [NADP] cytoplasmic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.48 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x 70Q: 3-benzyl-N-[3-(dimethylsulfamoyl)phenyl]-4-oxo-3,4-dihydrophthalazine-1-carboxamide(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xie, X. et al., Allosteric Mutant IDH1 Inhibitors Reveal Mechanisms for IDH1 Mutant and Isoform Selectivity. Structure (2017)
- Release Date
- 2017-02-08
- Peptides
- Isocitrate dehydrogenase [NADP] cytoplasmic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B