SMTL ID : 5suq.1

Crystal structure of the THO-Sub2 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 6.00 Å

Oligo State

hetero-2-2-2-mer

Ligands

11 x KEG: 12-TUNGSTOPHOSPHATE(Covalent)(Non-functional Binders)

KEG.1: 16 residues within 4Å: Chain A: N.320, H.337, G.338, H.339, M.340, K.341, E.344, R.348 Chain C: N.320, H.337, G.338, H.339, M.340, K.341, E.344, R.348 11 PLIP interactions: 4 interactions with chain C, 7 interactions with chain A, Hydrogen bonds: C:N.320, C:R.348, C:R.348, A:N.320, A:K.341, A:R.348, A:R.348 Metal complexes: C:H.339, A:H.339, A:H.339, A:H.339 KEG.2: 10 residues within 4Å: Chain A: K.196, R.200, R.228 Chain C: N.385, E.386, A.387, D.388, K.421, E.424, R.425 12 PLIP interactions: 8 interactions with chain C, 4 interactions with chain A, Hydrogen bonds: C:A.387, C:D.388, C:K.421, C:R.425, A:K.196, A:R.200, A:R.200, A:R.228 Salt bridges: C:K.421 Metal complexes: C:E.386, C:E.386, C:E.386 KEG.3: 10 residues within 4Å: Chain A: R.140, E.141, G.167, G.168 Chain C: K.314, S.315, T.316, T.363, D.364, V.365 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain A, Hydrogen bonds: C:T.316, C:T.363, C:D.364, C:V.365, A:R.140, A:R.140, A:G.168 Metal complexes: C:K.314 Salt bridges: A:R.140 KEG.4: 0 residues within 4Å: (No contacts) 0 PLIP interactions: KEG.5: 0 residues within 4Å: (No contacts) 0 PLIP interactions: KEG.6: 0 residues within 4Å: (No contacts) 0 PLIP interactions: KEG.7: 0 residues within 4Å: (No contacts) 0 PLIP interactions: KEG.8: 0 residues within 4Å: (No contacts) 0 PLIP interactions: KEG.9: 0 residues within 4Å: (No contacts) 0 PLIP interactions: KEG.10: 0 residues within 4Å: (No contacts) 0 PLIP interactions: KEG.11: 0 residues within 4Å: (No contacts) 0 PLIP interactions:

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, Y. et al., Structural and biochemical analyses of the DEAD-box ATPase Sub2 in association with THO or Yra1. Elife (2017)

Release Date

2017-01-18

Peptides

ATP-dependent RNA helicase SUB2: AC
Tex1: BD
Tho2, Hpr1, Mft1, and Thp2: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
M

F
N

ATP-dependent RNA helicase SUB2

Tex1

Tho2, Hpr1, Mft1, and Thp2

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