SMTL ID : 5svb.1

Mechanism of ATP-Dependent Acetone Carboxylation, Acetone Carboxylase AMP bound structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: E.89, H.111, H.150, D.153, H.175 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.89, A:H.150, A:D.153, A:D.153 MN.5: 5 residues within 4Å: Chain D: E.89, H.111, H.150, D.153, H.175 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.89, D:H.150, D:D.153, D:D.153, D:H.175

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 23 residues within 4Å: Chain B: T.31, M.32, K.48, G.321, G.322, A.362, S.401, H.404, L.410, N.414, F.415, L.416, G.417, G.482, G.483, A.484, V.487, S.701, D.702, A.703, T.704, T.705 Ligands: SO4.3 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:T.31, B:G.322, B:S.401, B:N.414, B:L.416, B:G.483, B:A.484, B:T.705 Water bridges: B:K.48 Salt bridges: B:K.48 pi-Stacking: B:F.415 AMP.6: 25 residues within 4Å: Chain E: T.31, M.32, K.48, G.321, G.322, T.323, A.362, V.386, S.401, H.404, L.410, N.414, F.415, L.416, G.417, G.482, G.483, A.484, V.487, S.701, D.702, A.703, T.704, T.705 Ligands: SO4.7 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:T.31, E:T.31, E:G.322, E:S.401, E:L.416, E:G.483, E:A.484, E:T.704, E:T.705 Salt bridges: E:K.48 pi-Stacking: E:F.415

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 10 residues within 4Å: Chain B: D.27, G.30, T.31, D.34, P.296, D.319, G.321, G.482, S.511 Ligands: AMP.2 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.319 SO4.7: 10 residues within 4Å: Chain E: D.27, G.30, T.31, D.34, P.296, D.319, G.321, G.482, S.511 Ligands: AMP.6 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:T.31, E:D.319 Water bridges: E:T.323, E:S.511

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 6 residues within 4Å: Chain C: C.74, C.76, H.78, C.124, E.126, C.127 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.74, C:C.76, C:C.124, C:C.127 ZN.8: 5 residues within 4Å: Chain F: C.74, C.76, H.78, C.124, C.127 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.74, F:C.76, F:C.124, F:C.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mus, F. et al., Structural Basis for the Mechanism of ATP-Dependent Acetone Carboxylation. Sci Rep (2017)

Release Date

2017-08-09

Peptides

Acetone carboxylase alpha subunit: AD
Acetone carboxylase beta subunit: BE
Acetone carboxylase gamma subunit: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

Acetone carboxylase alpha subunit

Acetone carboxylase beta subunit

Acetone carboxylase gamma subunit

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