- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 5 residues within 4Å:- Chain A: G.102, R.103, G.104, D.407, S.474
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.104, A:D.407
NA.11: 5 residues within 4Å:- Chain B: G.102, R.103, G.104, S.474, D.475
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.102
- Water bridges: B:G.104, B:E.108
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.3: 5 residues within 4Å:- Chain A: R.88, X.91, H.92, D.121
- Ligands: HEM.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.88, A:H.92
OXY.12: 5 residues within 4Å:- Chain B: R.88, X.91, H.92, D.121
- Ligands: HEM.10
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.88, B:D.121
- Water bridges: B:D.121
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 2 residues within 4Å:- Chain A: H.361, R.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.362
- Salt bridges: A:H.361, A:R.362
PO4.13: 3 residues within 4Å:- Chain B: K.360, H.361, R.362
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.360, B:R.362
- Salt bridges: B:H.361, B:R.362
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 4 residues within 4Å:- Chain A: A.123, L.189, T.303, S.304
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.189
- Hydrogen bonds: A:T.303
MPD.6: 3 residues within 4Å:- Chain A: D.63, P.134, K.138
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:K.138
- Hydrogen bonds: A:P.134
- Water bridges: A:K.138
MPD.14: 5 residues within 4Å:- Chain B: P.120, A.270, T.303, S.304, G.305
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:P.120, B:A.270
- Water bridges: B:W.289
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.7: 7 residues within 4Å:- Chain A: D.40, P.41, M.42, G.43
- Chain B: P.609, K.707, D.711
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:K.707, B:K.707, A:P.41
TRS.8: 9 residues within 4Å:- Chain A: A.100, D.101, R.472, V.573, L.574, E.575, P.576, K.600, L.603
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:A.100, A:R.472, A:R.472, A:K.600, A:K.600
- Water bridges: A:V.577
TRS.9: 7 residues within 4Å:- Chain A: P.609, K.707, D.711
- Chain B: D.40, P.41, M.42, G.43
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.707, B:M.42
- Water bridges: A:S.607, A:P.609, A:Y.699, A:K.707, A:K.707
TRS.15: 9 residues within 4Å:- Chain B: A.100, D.101, R.472, V.573, L.574, E.575, P.576, K.600, L.603
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.100, B:R.472, B:R.472, B:K.600, B:K.600
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carpena, X. et al., A molecular switch and electronic circuit modulate catalase activity in catalase-peroxidases. EMBO Rep. (2005)
- Release Date
- 2016-08-24
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carpena, X. et al., A molecular switch and electronic circuit modulate catalase activity in catalase-peroxidases. EMBO Rep. (2005)
- Release Date
- 2016-08-24
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B