SMTL ID : 5sww.2 (3 other biounits)

Crystal Structure of Human APOBEC3A complexed with ssDNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.78, C.109, C.114 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.78, A:C.109, A:C.114

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Y.43, H.59, R.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.43, A:Y.43, A:R.60, A:R.60 GOL.3: 3 residues within 4Å: Chain A: R.131, E.165, H.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.46, A:R.131, A:E.165 GOL.4: 1 residues within 4Å: Chain B: A.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B. Nat. Struct. Mol. Biol. (2017)

Release Date

2016-12-28

Peptides

DNA dC->dU-editing enzyme APOBEC-3A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA dC->dU-editing enzyme APOBEC-3A

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