- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.3: 5 residues within 4Å:- Chain A: R.88, X.91, H.92, D.121
- Ligands: HEM.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.88, A:H.92
OXY.10: 5 residues within 4Å:- Chain B: R.88, X.91, H.92, D.121
- Ligands: HEM.8
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.88, B:D.121
- Water bridges: B:D.121
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.4: 4 residues within 4Å:- Chain A: A.123, L.189, T.303, S.304
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.189
- Hydrogen bonds: A:T.303
MPD.5: 4 residues within 4Å:- Chain A: D.63, P.134, I.135, K.138
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:K.138
- Hydrogen bonds: A:P.134
MPD.11: 7 residues within 4Å:- Chain B: P.120, A.123, A.270, V.273, W.289, T.303, S.304
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.270, B:V.273
- Hydrogen bonds: B:W.289
MPD.12: 5 residues within 4Å:- Chain B: G.547, H.548, A.549, E.706, R.710
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:H.548
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.6: 9 residues within 4Å:- Chain A: A.100, D.101, R.472, V.573, L.574, E.575, P.576, K.600, L.603
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:A.100, A:R.472, A:R.472, A:K.600
- Water bridges: A:S.469, A:L.574, A:V.577
TRS.7: 7 residues within 4Å:- Chain A: D.40, P.41, M.42, G.43
- Chain B: P.609, K.707, D.711
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:D.40, B:K.707, B:K.707
TRS.13: 7 residues within 4Å:- Chain A: P.609, K.707, D.711
- Chain B: D.40, P.41, M.42, G.43
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:K.707, A:K.707, B:M.42
- Water bridges: A:Y.699, B:G.43
TRS.14: 8 residues within 4Å:- Chain B: A.100, D.101, R.472, V.573, L.574, E.575, K.600, L.603
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:A.100, B:R.472, B:R.472, B:K.600, B:K.600
- Water bridges: B:V.577
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carpena, X. et al., Roles for Arg426 and Trp111 in the modulation of NADH oxidase activity of the catalase-peroxidase KatG from Burkholderia pseudomallei inferred from pH-induced structural changes. Biochemistry (2006)
- Release Date
- 2016-08-31
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carpena, X. et al., Roles for Arg426 and Trp111 in the modulation of NADH oxidase activity of the catalase-peroxidase KatG from Burkholderia pseudomallei inferred from pH-induced structural changes. Biochemistry (2006)
- Release Date
- 2016-08-31
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B