SMTL ID : 5sxh.2 (1 other biounit)

Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.60, E.62, C.91, W.94, C.96 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.60, A:C.91, A:C.96, H2O.1 ZN.4: 4 residues within 4Å: Chain B: H.60, C.91, W.94, C.96 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.60, B:C.91, B:C.96, H2O.7

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.3: 1 residues within 4Å: Chain A: E.149 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.149 EDO.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B. Sci Rep (2017)

Release Date

2017-12-27

Peptides

DNA dC->dU-editing enzyme APOBEC-3B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA dC->dU-editing enzyme APOBEC-3B

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