- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 4 residues within 4Å:- Chain A: G.102, R.103, G.104, S.474
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.407, A:D.407
NA.9: 5 residues within 4Å:- Chain B: G.102, R.103, G.104, D.407, S.474
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.474
- Water bridges: B:E.108
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.4: 4 residues within 4Å:- Chain A: W.91, H.92, D.121
- Ligands: HEM.1
4 PLIP interactions:4 interactions with chain A- Water bridges: A:H.92, A:D.121, A:Y.218, A:Y.218
OXY.11: 6 residues within 4Å:- Chain B: R.88, H.92, D.121, T.304
- Ligands: HEM.8, OXY.12
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.88, B:H.92
- Water bridges: B:D.121, B:D.121
OXY.12: 5 residues within 4Å:- Chain B: W.91, H.92, D.121
- Ligands: HEM.8, OXY.11
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.121
- Water bridges: B:Y.218, B:Y.218, B:V.219
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.5: 2 residues within 4Å:- Chain A: H.361, R.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.362
- Salt bridges: A:H.361, A:R.362
PO4.13: 3 residues within 4Å:- Chain B: K.360, H.361, R.362
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.360, B:R.362
- Salt bridges: B:H.361, B:R.362
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.6: 3 residues within 4Å:- Chain A: P.120, W.289, T.303
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.120
MPD.14: 6 residues within 4Å:- Chain B: A.270, W.289, I.302, T.303, T.304, G.305
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.270, B:I.302
- Water bridges: B:W.289
- 2 x NIZ: pyridine-4-carbohydrazide(Non-covalent)
NIZ.7: 11 residues within 4Å:- Chain A: R.103, E.108, E.178, D.179, V.180, G.473, S.474, Q.602, L.603, T.605
- Ligands: CL.3
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.103, A:R.103, A:E.178, A:Q.602
- Water bridges: A:G.104, A:G.104, A:T.605
NIZ.15: 11 residues within 4Å:- Chain B: R.103, E.108, E.178, D.179, V.180, G.473, S.474, Q.602, L.603, T.605
- Ligands: CL.10
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.103, B:E.178, B:E.178, B:Q.602
- Water bridges: B:G.104, B:T.605
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wiseman, B. et al., Isonicotinic acid hydrazide conversion to Isonicotinyl-NAD by catalase-peroxidases. J. Biol. Chem. (2010)
- Release Date
- 2016-09-07
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x OXY: OXYGEN MOLECULE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x NIZ: pyridine-4-carbohydrazide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wiseman, B. et al., Isonicotinic acid hydrazide conversion to Isonicotinyl-NAD by catalase-peroxidases. J. Biol. Chem. (2010)
- Release Date
- 2016-09-07
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B