SMTL ID : 5sya.1

Atomic resolution structure of D24N mutant human DJ-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: C.109, H.129, P.161 Chain B: R.31, P.187 Ligands: EDO.2 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.31, B:R.31 Water bridges: A:R.51 EDO.2: 6 residues within 4Å: Chain A: C.109, A.110, H.129, L.131, A.132 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.79 EDO.3: 6 residues within 4Å: Chain A: R.31, P.187 Chain B: C.109, H.129, P.161 Ligands: EDO.4 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:R.51 Hydrogen bonds: A:R.31, A:R.31 EDO.4: 6 residues within 4Å: Chain B: C.109, A.110, H.129, L.131, A.132 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, J. et al., Short Carboxylic Acid-Carboxylate Hydrogen Bonds Can Have Fully Localized Protons. Biochemistry (2017)

Release Date

2016-12-28

Peptides

Protein deglycase DJ-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein deglycase DJ-1