SMTL ID : 5syb.2 (1 other biounit)

Crystal structure of human PHF5A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.14, C.49, C.52, C.88 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.14, A:C.49, A:C.52, A:C.88 ZN.2: 4 residues within 4Å: Chain A: C.33, C.36, C.75, C.78 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.33, A:C.36, A:C.75, A:C.78 ZN.3: 4 residues within 4Å: Chain A: C.26, C.29, C.61, C.64 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.26, A:C.29, A:C.61, A:C.64

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: F.13, R.15, I.35, K.83, D.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.15, A:D.86 Water bridges: A:D.86 EDO.5: 3 residues within 4Å: Chain A: G.19, V.20, D.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.20 Water bridges: A:G.19, A:D.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teng, T. et al., Splicing modulators act at the branch point adenosine binding pocket defined by the PHF5A-SF3b complex. Nat Commun (2017)

Release Date

2016-09-07

Peptides

PHD finger-like domain-containing protein 5A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PHD finger-like domain-containing protein 5A

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