- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 4 residues within 4Å:- Chain A: G.102, R.103, G.104, S.474
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.102, A:D.407
- Water bridges: A:E.108, A:E.108
NA.9: 4 residues within 4Å:- Chain B: G.102, R.103, G.104, S.474
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.407
- Water bridges: B:E.108
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.4: 4 residues within 4Å:- Chain A: R.88, H.92, A.121
- Ligands: HEM.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.88, A:H.92
- Water bridges: A:A.121
OXY.11: 4 residues within 4Å:- Chain B: R.88, H.92, A.121
- Ligands: HEM.8
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.88, B:A.121
- Water bridges: B:H.92
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 4 residues within 4Å:- Chain A: D.63, P.134, I.135, K.138
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:K.138
- Hydrogen bonds: A:P.134
MPD.6: 4 residues within 4Å:- Chain A: L.189, W.289, T.303, S.304
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.189
- Hydrogen bonds: A:W.289
MPD.12: 7 residues within 4Å:- Chain B: P.120, A.123, A.270, V.273, W.289, T.303, S.304
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.123, B:A.270, B:V.273
MPD.13: 2 residues within 4Å:- Chain B: D.63, P.134
No protein-ligand interaction detected (PLIP)- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.7: 2 residues within 4Å:- Chain A: H.361, R.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.362
- Salt bridges: A:H.361, A:R.362
PO4.14: 3 residues within 4Å:- Chain B: K.360, H.361, R.362
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.360, B:R.362
- Salt bridges: B:H.361, B:R.362
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C. et al., An ionizable active-site tryptophan imparts catalase activity to a peroxidase core. J. Am. Chem. Soc. (2014)
- Release Date
- 2016-09-07
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C. et al., An ionizable active-site tryptophan imparts catalase activity to a peroxidase core. J. Am. Chem. Soc. (2014)
- Release Date
- 2016-09-07
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B