- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 5 residues within 4Å:- Chain A: G.102, R.103, G.104, D.407, S.474
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.407, A:D.407
- Water bridges: A:E.108
NA.10: 4 residues within 4Å:- Chain B: G.102, R.103, G.104, S.474
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.407
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.4: 5 residues within 4Å:- Chain A: W.91, H.92, I.217
- Ligands: HEM.1, NIZ.5
3 PLIP interactions:3 interactions with chain A- Water bridges: A:I.217, A:I.217, A:Y.218
OXY.12: 5 residues within 4Å:- Chain B: W.91, H.92, I.217
- Ligands: HEM.9, NIZ.14
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:W.91
- Water bridges: B:I.217, B:Y.218, B:V.219
- 3 x NIZ: pyridine-4-carbohydrazide(Non-covalent)
NIZ.5: 7 residues within 4Å:- Chain A: R.88, W.91, H.92, A.121, P.221
- Ligands: HEM.1, OXY.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.88
NIZ.13: 11 residues within 4Å:- Chain B: R.103, E.108, E.178, D.179, V.180, G.473, S.474, Q.602, L.603, T.605
- Ligands: CL.11
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.103, B:E.178, B:E.178, B:Q.602
- Water bridges: B:G.104, B:T.605
NIZ.14: 8 residues within 4Å:- Chain B: R.88, W.91, H.92, A.121, P.221, S.304
- Ligands: HEM.9, OXY.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.88
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.6: 3 residues within 4Å:- Chain A: D.63, P.134, I.135
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:P.134
MPD.7: 6 residues within 4Å:- Chain A: A.123, L.189, V.273, W.289, T.303, S.304
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.189, A:V.273
- Hydrogen bonds: A:W.289
MPD.15: 7 residues within 4Å:- Chain B: P.120, A.123, A.270, V.273, W.289, T.303, S.304
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:A.123, B:A.270, B:V.273
- Water bridges: B:W.289
MPD.16: 3 residues within 4Å:- Chain B: P.134, I.135, K.138
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:K.138
- Hydrogen bonds: B:P.134
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.8: 3 residues within 4Å:- Chain A: K.360, H.361, R.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.362
- Salt bridges: A:H.361, A:R.362
PO4.17: 3 residues within 4Å:- Chain B: K.360, H.361, R.362
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.360, B:R.362
- Salt bridges: B:H.361, B:R.362
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vidossich, P. et al., Binding of the antitubercular pro-drug isoniazid in the heme access channel of catalase-peroxidase (KatG). A combined structural and metadynamics investigation. J Phys Chem B (2014)
- Release Date
- 2016-09-07
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- 3 x NIZ: pyridine-4-carbohydrazide(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vidossich, P. et al., Binding of the antitubercular pro-drug isoniazid in the heme access channel of catalase-peroxidase (KatG). A combined structural and metadynamics investigation. J Phys Chem B (2014)
- Release Date
- 2016-09-07
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B