SMTL ID : 5sym.2 (1 other biounit)

Cocrystal structure of the human acyl protein thioesterase 1 with an isoform-selective inhibitor, ML348

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x 71Q: N-[2-chloro-5-(trifluoromethyl)phenyl]-2-[4-(furan-2-carbonyl)piperazin-1-yl]acetamide(Non-covalent)

71Q.1: 21 residues within 4Å: Chain A: L.30, L.63, I.75, G.77, L.78, S.79, P.80, S.82, E.84, S.119, Q.120, W.145, L.146, R.149, L.176, V.177, P.178, F.181, L.184, T.185 Ligands: CL.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.75, A:L.78, A:W.145, A:L.176, A:V.177, A:F.181, A:L.184 Hydrogen bonds: A:R.149 Water bridges: A:G.77, A:W.145, A:R.149 Salt bridges: A:E.84

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: M.207, S.209 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.209

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: G.29, L.30, S.119, Q.120 Ligands: 71Q.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Won, S.J. et al., Molecular Mechanism for Isoform-Selective Inhibition of Acyl Protein Thioesterases 1 and 2 (APT1 and APT2). ACS Chem. Biol. (2016)

Release Date

2016-10-26

Peptides

Acyl-protein thioesterase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Acyl-protein thioesterase 1

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