- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x COA: COENZYME A(Non-covalent)
COA.2: 22 residues within 4Å:- Chain A: V.58, T.59, L.60, G.87, R.88, T.89, S.90, V.118, P.125, R.149, S.152, L.153, S.156
- Chain D: V.32, G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Ligands: CL.3
15 PLIP interactions:10 interactions with chain A, 5 interactions with chain D- Hydrogen bonds: A:T.59, A:R.88, A:R.88, A:T.89, A:S.90, A:S.90, A:R.149, A:R.149, D:F.67, D:K.68
- Water bridges: A:S.152, D:K.64
- Salt bridges: A:R.149, D:K.68, D:K.68
COA.5: 21 residues within 4Å:- Chain B: V.58, T.59, L.60, G.87, R.88, T.89, S.90, P.125, R.149, S.152, L.153
- Chain E: V.32, H.33, G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Ligands: CL.6
16 PLIP interactions:11 interactions with chain B, 5 interactions with chain E- Hydrophobic interactions: B:P.125
- Hydrogen bonds: B:T.59, B:R.88, B:T.89, B:S.90, B:R.149, B:R.149, B:S.152, E:F.67, E:K.68
- Water bridges: B:R.88, B:R.88, E:I.71
- Salt bridges: B:R.149, E:K.68, E:K.68
COA.8: 22 residues within 4Å:- Chain C: V.58, T.59, L.60, G.87, R.88, T.89, S.90, V.118, P.125, R.149, S.152, L.153, S.156
- Chain F: V.32, G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Ligands: CL.9
15 PLIP interactions:10 interactions with chain C, 5 interactions with chain F- Hydrogen bonds: C:T.59, C:R.88, C:R.88, C:T.89, C:S.90, C:S.90, C:R.149, C:R.149, F:F.67, F:K.68
- Water bridges: C:S.152, F:K.64
- Salt bridges: C:R.149, F:K.68, F:K.68
COA.11: 21 residues within 4Å:- Chain A: V.32, H.33, G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Chain D: V.58, T.59, L.60, G.87, R.88, T.89, S.90, P.125, R.149, S.152, L.153
- Ligands: CL.12
16 PLIP interactions:11 interactions with chain D, 5 interactions with chain A- Hydrophobic interactions: D:P.125
- Hydrogen bonds: D:T.59, D:R.88, D:T.89, D:S.90, D:R.149, D:R.149, D:S.152, A:F.67, A:K.68
- Water bridges: D:R.88, D:R.88, A:I.71
- Salt bridges: D:R.149, A:K.68, A:K.68
COA.14: 22 residues within 4Å:- Chain B: V.32, G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Chain E: V.58, T.59, L.60, G.87, R.88, T.89, S.90, V.118, P.125, R.149, S.152, L.153, S.156
- Ligands: CL.15
15 PLIP interactions:9 interactions with chain E, 6 interactions with chain B- Hydrogen bonds: E:T.59, E:R.88, E:R.88, E:T.89, E:S.90, E:S.90, E:R.149, E:R.149, B:F.67, B:K.68
- Salt bridges: E:R.149, B:K.68, B:K.68
- Water bridges: B:K.64, B:K.64
COA.17: 21 residues within 4Å:- Chain C: V.32, H.33, G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Chain F: V.58, T.59, L.60, G.87, R.88, T.89, S.90, P.125, R.149, S.152, L.153
- Ligands: CL.18
16 PLIP interactions:11 interactions with chain F, 5 interactions with chain C- Hydrophobic interactions: F:P.125
- Hydrogen bonds: F:T.59, F:R.88, F:T.89, F:S.90, F:R.149, F:R.149, F:S.152, C:F.67, C:K.68
- Water bridges: F:R.88, F:R.88, C:I.71
- Salt bridges: F:R.149, C:K.68, C:K.68
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 4 residues within 4Å:- Chain A: V.58, T.59
- Chain D: G.34
- Ligands: COA.2
Ligand excluded by PLIPCL.6: 4 residues within 4Å:- Chain B: V.58, T.59
- Chain E: G.34
- Ligands: COA.5
Ligand excluded by PLIPCL.9: 4 residues within 4Å:- Chain C: V.58, T.59
- Chain F: G.34
- Ligands: COA.8
Ligand excluded by PLIPCL.12: 4 residues within 4Å:- Chain A: G.34
- Chain D: V.58, T.59
- Ligands: COA.11
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain B: G.34
- Chain E: V.58, T.59
- Ligands: COA.14
Ligand excluded by PLIPCL.18: 4 residues within 4Å:- Chain C: G.34
- Chain F: V.58, T.59
- Ligands: COA.17
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Khandokar, Y.B. et al., Structural insights into GDP-mediated regulation of a bacterial acyl-CoA thioesterase. J. Biol. Chem. (2017)
- Release Date
- 2016-09-14
- Peptides
- Acyl-CoA hydrolase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
AD
CE
AF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x COA: COENZYME A(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Khandokar, Y.B. et al., Structural insights into GDP-mediated regulation of a bacterial acyl-CoA thioesterase. J. Biol. Chem. (2017)
- Release Date
- 2016-09-14
- Peptides
- Acyl-CoA hydrolase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
AD
CE
AF
C