SMTL ID : 5t00.1 (1 other biounit)

Human CTCF ZnF3-7 and methylated DNA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.9, D.11, C.12, M.14, H.25, H.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:C.12, A:H.25, A:H.30 ZN.2: 7 residues within 4Å: Chain A: C.38, M.40, C.41, Y.43, H.54, I.55, H.58 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.38, A:C.41, A:H.54, A:H.58 ZN.3: 6 residues within 4Å: Chain A: C.66, L.68, C.69, Y.71, H.82, H.86 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.66, A:C.69, A:H.82, A:H.86 ZN.4: 7 residues within 4Å: Chain A: C.94, I.96, C.97, H.98, A.99, H.110, H.115 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.94, A:C.97, A:H.110, A:H.115 ZN.5: 6 residues within 4Å: Chain A: C.124, H.126, C.127, T.129, H.140, H.145 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.124, A:C.127, A:H.140, A:H.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell (2017)

Release Date

2017-05-24

Peptides

Transcriptional repressor CTCF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcriptional repressor CTCF

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