SMTL ID : 5t06.1

Crystal structure of a putative acyl-CoA thioesterase EC709/ECK0725 from Escherichia coli in complex with Hexanoyl-CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: E.77, V.97, N.98, A.99, N.101 No protein-ligand interaction detected (PLIP) EDO.2: 4 residues within 4Å: Chain B: Y.24, H.25 Chain D: F.57 Ligands: EDO.7 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:F.57, B:H.25 EDO.3: 4 residues within 4Å: Chain B: E.33, R.36, F.57, V.59 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:E.33, B:E.33, B:R.36 Water bridges: D:H.25 EDO.5: 2 residues within 4Å: Chain C: L.103 Ligands: HXC.4 No protein-ligand interaction detected (PLIP) EDO.6: 4 residues within 4Å: Chain C: E.33, R.36, F.57, V.59 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.33, C:R.36 Water bridges: C:E.33, A:H.25 EDO.7: 7 residues within 4Å: Chain B: H.25 Chain D: E.33, R.36, F.57, V.59, V.111 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.36

1 x HXC: HEXANOYL-COENZYME A(Non-covalent)

HXC.4: 19 residues within 4Å: Chain A: F.57, V.58, V.59, R.60, V.112, M.119, K.120, P.121 Chain B: Y.14 Chain C: G.20, V.23, Y.24, H.25, Y.66, Y.67, A.68, P.69, T.102 Ligands: EDO.5 12 PLIP interactions: 8 interactions with chain A, 2 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: A:V.58, A:V.112, A:P.121, B:Y.14, B:Y.14 Hydrogen bonds: A:V.59, A:V.59, A:R.60, A:K.120, C:H.25, C:Y.66 Salt bridges: A:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, N. et al., Crystal structure of a putative acyl-CoA thioesterase EC709/ECK0725 from Escherichia coli in complex with Hexanoyl-CoA. To be published

Release Date

2016-09-07

Peptides

Acyl-CoA thioester hydrolase YbgC: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Acyl-CoA thioester hydrolase YbgC

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