SMTL ID : 5t07.1

Crystal structure of a putative acyl-CoA thioesterase EC709/ECK0725 from Escherichia coli in complex with Decanoyl-CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

homo-tetramer

Ligands

3 x MFK: decanoyl-CoA(Non-covalent)

MFK.1: 19 residues within 4Å: Chain A: A.19, G.20, V.23, Y.24, H.25, Y.66, Y.67, A.68, P.69, T.102 Chain C: Y.14 Chain D: A.56, F.57, V.58, V.59, R.60, P.116, M.119, P.121 12 PLIP interactions: 6 interactions with chain D, 5 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: D:A.56, D:V.58, D:P.116, A:Y.66, C:Y.14 Hydrogen bonds: D:V.59, D:V.59, A:H.25, A:Y.66, A:Y.67 Salt bridges: D:R.60 Water bridges: A:R.71 MFK.2: 26 residues within 4Å: Chain B: A.19, G.20, V.23, Y.24, H.25, Y.66, Y.67, A.68, P.69 Chain C: M.51, A.56, F.57, V.58, V.59, R.60, R.86, G.87, T.88, S.89, L.110, V.112, V.114, P.116, M.119, P.121 Chain D: Y.14 26 PLIP interactions: 18 interactions with chain C, 6 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: C:A.56, C:V.58, C:V.58, C:V.114, C:P.116, B:Y.66, D:Y.14, D:Y.14 Hydrogen bonds: C:V.59, C:V.59, C:G.87, C:T.88, C:S.89, C:S.89, C:S.89, B:H.25, B:H.25, B:Y.66, B:Y.67 Water bridges: C:R.60, C:R.60, C:R.60, C:R.60, C:T.88, C:T.88, B:E.65 MFK.3: 20 residues within 4Å: Chain A: M.51, A.56, F.57, V.58, V.59, R.60, P.116, M.119, P.121 Chain B: Y.14 Chain D: A.19, G.20, V.23, Y.24, H.25, Y.66, Y.67, A.68, P.69, T.102 16 PLIP interactions: 9 interactions with chain A, 4 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: A:A.56, A:V.58, A:V.58, A:P.116, D:Y.66, B:Y.14, B:Y.14, B:Y.14 Hydrogen bonds: A:V.59, A:V.59, D:H.25, D:Y.66, D:Y.67 Water bridges: A:R.60, A:M.119 Salt bridges: A:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, N. et al., Crystal structure of a putative acyl-CoA thioesterase EC709/ECK0725 from Escherichia coli in complex with Decanoyl-CoA. To be published

Release Date

2016-09-07

Peptides

Acyl-CoA thioester hydrolase YbgC: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Acyl-CoA thioester hydrolase YbgC

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