SMTL ID : 5t0s.1

Synaptotagmin 1 C2B domain, cadmium-bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x CD: CADMIUM ION(Non-covalent)

CD.1: 4 residues within 4Å: Chain A: D.33, D.39, D.93, Y.94 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.33, A:D.39, A:D.93, A:Y.94, H2O.4

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: T.113, E.116 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.113, A:E.116, A:E.116 Water bridges: A:T.113, A:A.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katti, S. et al., Non-Native Metal Ion Reveals the Role of Electrostatics in Synaptotagmin 1-Membrane Interactions. Biochemistry (2017)

Release Date

2017-06-14

Peptides

Synaptotagmin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Synaptotagmin-1